Title
Simple approach for ranking structure determining residues
11627/371311627/3713
Author
Luna Martínez, Oscar Daniel
Vidal Limón, Abraham Marcelino
Villalba Velázquez, Miryam Ivette
Sánchez Alcalá, Rosalba
Garduño Juárez, Ramón
Uversky, Vladimir
Becerril Luján, Baltazar
Abstract
"Mutating residues has been a common task in order to study structural properties of the protein of interest. Here, we propose and validate a simple method that allows the identification of structural determinants; i.e., residues essential for preservation of the stability of global structure, regardless of the protein topology. This method evaluates all of the residues in a 3D structure of a given globular protein by ranking them according to their connectivity and movement restrictions without topology constraints. Our results matched up with sequence-based predictors that look up for intrinsically disordered segments, suggesting that protein disorder can also be described with the proposed methodology."
Publication date
2016-06Publication type
articleDOI
https://doi.org/10.7717/peerj.2136Knowledge area
BIOLOGÍA MOLECULARCollections
Editor
PeerJ, IncKeywords
Molecular dynamicsShannon dynamical entropy
Intrinsic disorder
Thermodynamics